miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24102286|gb|BU891221.1|BU891221 AAAATACCTTTGCTTATGGCTATTAAGGGTCAGATCTATGATGTTTCTCAAAGCAGGATGTTCTATGGACCTGGTGGACC
TTATGCATTGCTTGCTGGAAAGGATGCTAGCAGAGCTCTAGCGAAGATGTCTTTCGAAGATAAAGATTTAACTGGTGATG
TCTCTGGTCTTGGTCCATTTGAATGGGAGGCCTTGCAGGATTGGGAATACAAGTTCATGAGTAAATATATTAAGGTTGGA
AGAATCAACAAGACGGATCCAGTAACTGATGGAACCTCGACCAGTGAACCTGCTGCAGAGGCTACAGAAAGCGATGTTGC
TAAGCCAGCTGAAGATGTTCCATCAGTCGCTGCACCTGTTGAA




Most similar to sp|Q9M2Z4|MSBP2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M2Z4|MSBP2_ARATH Membrane steroid-binding protein 2
           OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1
          Length = 233

 Score =  162 bits (411), Expect = 5e-40
 Identities = 82/104 (78%), Positives = 88/104 (84%)
 Frame = +1

Query: 1   KIPLLMAIKGQIYDVSQSRMFYGPGGPYALLAGKDASRALAKMSFEDKDLTGDVSGLGPF 180
           K PLLMAIKGQIYDVSQSRMFYGPGGPYAL AGKDASRALAKMSFED+DLTGD+SGLG F
Sbjct: 85  KKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAF 144

Query: 181 EWEALQDWEYKFMSKYIKVGRINKTDPVTDGTSTSEPAAEATES 312
           E EALQDWEYKFMSKY+KVG I K D   +G  +SEP+   T S
Sbjct: 145 ELEALQDWEYKFMSKYVKVGTIQKKD--GEGKESSEPSEAKTAS 186